Softwares

Souvik Seal: Softwares

R logo

MIAMI

For studying marker co-expression in multiplex imagingdata.

MIAMI

This R package is associated with the paper: "MIAMI: Mutual Information-based Association Analysis of Multiplex Imaging data." Available here.

C/python logo

RCFGL

For estimating multiple Gaussian Graphical networks.

RCFGL

This C and Python based package is associated with the manuscript: "Rapid condition-adaptive Fused Graphical Lasso". Available here.

R logo

DenVar

For studying marker influence on survival in mIHC and MIBI data.

DenVar

This R package is associated with the paper: "DenVar: Density based Variation analysis of multiplex imaging data." Available here.

Python logo

PredLMM

For estimating SNP heritability.

PredLMM

This Python based package is associated with the paper: "Rapid Estimation of SNP Heritability using Predictive Process approximation in Large scale Cohort Studies". Available here.

R logo

VectraMIBI

For cell-phenotyping in multiplex imaging data.

VectraMIBI

This R package is associated with the paper "On Clustering for Cell Phenotyping in Multiplex Immunohistochemistry (mIHC) and Multiplexed Ion Beam Imaging (MIBI) Data". Available here.

R logo

RMultiPAR

For genetic association analysis.

RMultiPAR

This R based package is associated with the paper "Multivariate Association Analysis of Correlated Traits in Related Individuals." Available here.